Products related to Phylogenetics:
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Molecular Evolution and Phylogenetics
This book presents the statistical methods that are useful in the study of molecular evolution and illustrates how to use them in actual data analysis.Molecular evolution has been developing at a great pace over the past decade or so, driven by the huge increase in genetic sequence data from many organisms, the improvement of high-speed microcomputers, and the development of several new methods for phylogenetic analysis.This book for graduate students and researchers, assuming a basic knowledge of evolution, molecular biology, and elementary statistics, should make it possible for many investigators to incorporate refined statistical analysis of large-scale data in their own work.Nei is one of the leading workers in this area. He and Kumar have developed a computer program called MEGA, which has been sold for about $20 to over 1900 users.For the book, the authors are thoroughly revising MEGA and will make it available via FTP.The book also included analysis using the other most popular programs for phylogenetic studies, including PAUP, PHYLIP, MOLPHY, and PAML.
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Bayesian Phylogenetics : Methods, Algorithms, and Applications
Offering a rich diversity of models, Bayesian phylogenetics allows evolutionary biologists, systematists, ecologists, and epidemiologists to obtain answers to very detailed phylogenetic questions.Suitable for graduate-level researchers in statistics and biology, Bayesian Phylogenetics: Methods, Algorithms, and Applications presents a snapshot of current trends in Bayesian phylogenetic research.Encouraging interdisciplinary research, this book introduces state-of-the-art phylogenetics to the Bayesian statistical community and, likewise, presents state-of-the-art Bayesian statistics to the phylogenetics community.The book emphasizes model selection, reflecting recent interest in accurately estimating marginal likelihoods.It also discusses new approaches to improve mixing in Bayesian phylogenetic analyses in which the tree topology varies.In addition, the book covers divergence time estimation, biologically realistic models, and the burgeoning interface between phylogenetics and population genetics.
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An Introduction to Molecular Evolution and Phylogenetics
DNA can be extracted and sequenced from a diverse range of biological samples, providing a vast amount of information about evolution and ecology.The analysis of DNA sequences contributes to evolutionary biology at all levels, from dating the origin of the biological kingdoms to untangling family relationships.An Introduction to Molecular Evolution and Phylogenetics presents the fundamental concepts and intellectual tools you need to understand how the genome records information about evolutionary past and processes, how that information can be "read", and what kinds of questions we can use that information to answer.Starting with evolutionary principles, and illustrated throughout with biological examples, it is the perfect starting point on the journey to an understanding of the way molecular data is used in modern biology.Online Resource Centre The Online Resource Centre features: For registered adopters of the book:- Class plans for one-hour hands-on sessions associated with each chapter- Figures from the textbook to view and download
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Computational Phylogenetics : An Introduction to Designing Methods for Phylogeny Estimation
A comprehensive account of both basic and advanced material in phylogeny estimation, focusing on computational and statistical issues.No background in biology or computer science is assumed, and there is minimal use of mathematical formulas, meaning that students from many disciplines, including biology, computer science, statistics, and applied mathematics, will find the text accessible.The mathematical and statistical foundations of phylogeny estimation are presented rigorously, following which more advanced material is covered.This includes substantial chapters on multi-locus phylogeny estimation, supertree methods, multiple sequence alignment techniques, and designing methods for large-scale phylogeny estimation.The author provides key analytical techniques to prove theoretical properties about methods, as well as addressing performance in practice for methods for estimating trees.Research problems requiring novel computational methods are also presented, so that graduate students and researchers from varying disciplines will be able to enter the broad and exciting field of computational phylogenetics.
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